Links to Bioinformatics Databases and Tools
search engines
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EBI
bioinformatics search
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Google
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Yahoo!
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Infoseek
general reference
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Wentian
Li's site at Rockefeller
databases
primary databases
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GenBank
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protein
sequences: SWISS-PROT/TrEMBL
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protein
structure: PDB WWW Server
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genome databases
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a
list of sequenced genomes
E. coli
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E.
coli Genome/Univ. Wisconsin-Madison
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E
Coli database/Pasteur Institute
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RegulonDB
DataBase
S. cerevisae
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Saccharomyces
Genome Database
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Yeast
Promoter Database
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Yeast
regulatory sequence analysis
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MIPS
Protein-Protein Interaction Table
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C. elegans
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The
Sanger Centre : C. elegans Project
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WU
GSC: C. elegans
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WormBase
- Home Page
Drosophila
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Berkeley
Drosophia Genome Project databases
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FlyBase
@ flybase.bio.indiana.edu
human genome
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Human Genome-NCBI
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Human Genome-UCSC
derived databases and other specialized sources
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Eukaryotic
Promoter Database
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TRANSFAC
- The Transcription Factor Database
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PROSITE - Database of protein families and domains
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BLOCKS database
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Pfam - database of protein domains and HMMs
tools
sequence alignment and trees
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Smith-Walterman at EBI/EMBL
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BLAST at NCBI
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Fasta3
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ClustalW - multiple sequence alignment
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A List of Phylogeny Programs
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PHYLIP - one of the most popular phylogeny programs
gene finding
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a
list of gene finding algorithms
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New
GENSCAN Web Server at MIT
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GrailEXP:
A System for the Computational Analysis of DNA Sequence
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BCM
gene finder
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motif search
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MEME
- Introduction
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The
Gibbs Motif Sampler Homepage
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CONSENSUS
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ftp
site to download CONSENSUS
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